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Table 3 Ratio of mRNA abundance in glomeruli compared to lung, spleen and liver.

From: A human glomerular SAGE transcriptome database

   

SAGE

RT-PCR

Symbol

Name

LongTag

G: TPM

P: TPM

Ratio G: P

G: Lu

G: Sp

G: Li

SOST

Sclerosteosis

ACATATGAAAGCCTGCA

82

0.00

Infinity

130 ± 48

13007 ± 4827

7969 ± 2957

TCF21

Transcription factor 21

CGAGTGCTGAGCAAGGC

817

1.59

514

49 ± 16

27 ± 9

384 ± 123

FGF1

Fibroblast growth factor 1 (acidic)

TAAAGGCCTTTAATAAG

102

0.49

210

490 ± 70

166 ± 23

2565 ± 367

SPOCK2

sparc/osteonectin, cwcv and kazal-like domains

TGTGGAGTGTACTTGTT

245

1.44

170

45 ± 13

39 ± 12

258 ± 75

PTHR1

Parathyroid hormone receptor 1

TGACCAGGCGCTGGGGG

1143

8

141

196 ± 55

51 ± 14

30 ± 8

EFNB1

Ephrin-B1

AGGGAAGAGGAAAGTGC

102

1.50

68

20 ± 4

17 ± 3

30 ± 6

CDKN1C

Cyclin-dependent kinase inhibitor 1C (p57, Kip2)

TAGCAGCAACCGGCGGC

1021

46

22

51 ± 17

45 ± 15

198 ± 66

IGFBP5

Insulin-like growth factor binding protein 5

GAGTACGTTGACGGGGA

367

18

20

10 ± 4

22 ± 9

43 ± 17

CLDN5

Claudin 5

GACCGCGGCTTCCGCCG

715

38

19

5 ± 1

27 ± 7

24 ± 6

FAM65A

Family with sequence similarity 65, member A

GGTTCCTGGTGCCCCTT

755

43

17

18 ± 5

11 ± 3

51 ± 15

FOXC1

Forkhead box C1

AGCCTGTACGCGGCCGG

245

15

17

25 ± 6

302 ± 74

452 ± 110

C9orf58

Chromosome 9 open reading frame 58

GGAGTGTGCGTGGACTG

1572

102

15

36 ± 3

2 ± 0

171 ± 16

NES

Nestin

TGCTGACTCCCCCCATC

2001

138

14

22 ± 6

23 ± 6

339 ± 84

VEGFA

Vascular endothelial growth factor A

TTTCCAATCTCTCTCTC

1450

109

13

16 ± 4

53 ± 12

22 ± 5

ZDHHC6

Zinc finger, DHHC-type containing 6

TGGTACTTCTCTTTTCC

592

51

12

Infinity

60 ± 18

Infinity

MYO1E

Myosin IE

TATGAATGTACTAAGTA

245

26

9

11 ± 3

21 ± 6

13 ± 3

MYL9

Myosin, light chain 9, regulatory

GGAGTGTGCTCAGGAGT

3287

454

7

4 ± 1

15 ± 4

45 ± 11

ITM2B

Integral membrane protein 2B

TCACCTTAGGTAGTAGG

3328

508

7

4 ± 1

4 ± 1

5 ± 1

MYO1D

Myosin ID

ATTGTAGACAATGAGGG

327

82

4

3 ± 0

7 ± 1

7 ± 1

  1. The SAGE tag frequency in glomeruli (G: TPM) and SAGE library pool (P: TPM) as well as the relative SAGE tag enrichment in glomeruli (Ratio G: P) is shown. The transcript abundance relative to lung (G: Lu), spleen (G: Sp) and liver (G: Li) was determined by RT-PCR using distinct sets of microdissected glomeruli from kidneys of three different donors. G: glomeruli, Lu: lung, Sp: spleen, Li: liver. Mean ± SEM.