Table 1 List of APOL1 gene region haplotypes generated by Tag SNP, which presenting a global frequency higher than 1% considering all populations of the 1000 Genomes Project (Phase 3)
From: The analysis of APOL1 genetic variation and haplotype diversity provided by 1000 Genomes project
Chr22 | Tag SNP | APOL1 position | S-1 | S-2 | S-3 | S-4 | S-5 | S-6 | S-7 | S-8 |
|---|---|---|---|---|---|---|---|---|---|---|
36253756 | rs13056427 | 686 | C | T | C | C | C | C | C | C |
36256843 | rs136147 | 3773 | T | G | G | G | G | G | T | G |
36257808 | rs10854688 | 4738 | T | C | T | T | C | T | T | C |
36258099 | rs136150 | 5029 | A | T | A | A | A | A | A | T |
36260092 | rs136154 | 7022 | T | A | T | T | T | T | T | T |
36261550 | rs713929 | 8480 | G | A | G | G | G | G | G | G |
36263525 | rs136165 | 10455 | A | G | A | A | A | A | A | A |
36265015 | rs28391521 | 11945 | G | A | G | G | G | G | G | G |
36265520 | rs136175 | 12450 | A | G | A | A | A | A | A | A |
36266331 | rs9610473 | 13261 | T | T | T | C | T | T | T | T |
36266702 | rs5750246 | 13632 | A | G | A | A | A | G | G | A |
36267202 | rs78523 | 14132 | G | A | G | G | G | G | G | G |
Global frequency n = 2504 | 0.53607 | 0.09556 | 0.08766 | 0.06525 | 0.05509 | 0.02883 | 0.02758 | 0.02394 | ||