Table 3 List of APOL1 upstream regulatory region (URR) haplotypes generated by Tag SNP, which presenting a global frequency higher than 1% considering all populations of the 1000Genomes Project (Phase 3)
From: The analysis of APOL1 genetic variation and haplotype diversity provided by 1000 Genomes project
Chr22 | Tag SNP | APOL1 position | URR-1 | URR-2 | URR-3 | URR-4 |
|---|---|---|---|---|---|---|
36647960 | rs4821472 | −1157 | T | T | T | C |
36648093 | rs5995271 | −1024 | G | G | G | T |
36648352 | rs6000218 | −765 | A | A | A | C |
36648552 | rs5756115 | −565 | A | G | A | A |
36648738 | rs34318457 | −379 | C | C | C | T |
36649574 | rs9610467 | 458 | G | G | A | G |
36649802 | rs13056427 | 686 | C | T | C | C |
36649966 | rs6000220 | 850 | C | T | C | C |
Global frequency, n = 2504 | 0.66026 | 0.13199 | 0.1089 | 0.0639 | ||