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Table 1 Clinical characteristics and identified variants in three probands with Alport syndrome and their family members

From: Non-collagen genes role in digenic Alport syndrome

Family no. and the individual pedigree ID

Age (years)

Mutation

Model

Microhematuria

Macrohematuria

Proteinuria

Creatinine

eGFR

Hearing deficiency

Visual deficiency

Ultrastructural microscopy

Mutations in modifier genes

Family 1 (IV; 4)

22

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Persistent

0,3 g/dL

GBM thinning

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (IV; 5)

19

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Present

0,09 g/24 h

0,74 mg/dL

122,8 ml/min

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (IV; 6)

16

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Present

0,08 g/24 h

0,57 mg/dL

152 ml/min

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (III; 6)

47

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Persistent

Intermittent

Low frequency hypoacusia

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (III; 7)

47

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Present

Intermittent

0,54 mg/dL

112,4 ml/min

Hypoacusia

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (II; 4)

67

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Persistent

Persistent

Intermittent

0,9 mg/dL

82,5 ml/min

Bilateral Hypoacusia

Opalescence in the nucleus of the crystalline

Family 1 (III; 4)

36

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Family 1 (III; 5)

24

Absent

ADAS

Absent

Absent

Family 1 (III; 2)

54

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Absent

Family 1 (III; 3)

51

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Absent

Family 1 (III; 1)

47

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Absent

Absent

Intermittent

1,06 mg/dL

Absent

Absent

n/a renal cystis at the ultrasound

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (IV; 1)

19

Absent

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Absent

Family 1 (IV; 2)

15

c.1109G > A (p.(Gly370Glu)) COL4A4

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Absent

c.5149C > T (p.(His1717Tyr)) LAMA5 + [=]

Family 1 (IV; 3)

10

Absent

ADAS

Absent

Absent

Absent

Absent

Absent

Absent

Absent

Family 2 (II; 2)

26

c.3319G > A (p.(Gly1107Arg)) COL4A5

XLAS

Present

Present in childhood

1,71 g/24 h

1,30 mg/dL

75,8 ml/min

Absent

Absent

Thickening, thinning, podocytes foot processes fusion

c.9388C > T (p(His3130Tyr)) + [=] LAMA5

Family 2 (I; 2)

50

c.3319G > A (p.(Gly1107Arg)) COL4A5

XLAS

Present

Absent

Absent

Absent

No ultrastructural lesions

Family 2 (I; 1)

53

None

n/a

Present

Absent

Monolateral hypoacusia

Absent

n/a

c.9388C > T (p(His3130Tyr)) + [=] LAMA5

Family 3 (III; 2)

22

c.4444delC (p.(Leu1482Trpfs*70)) COL4A4

ADAS

Persistent

Absent

0,61 mg/dL

1443,8 ml/min

Mild bilateral hypoacusia

Absent

Thickening, thinning, podocytes foot processes retraction, podocytes buldging

c.686G > A (p.(Arg229Gln)) NPHS2;

c.2321C > T (p.(Thr774Ile)) + [=] LAMA5

Family 3 (II; 3)

52

c.4444delC (p.(Leu1482Trpfs*70)) COL4A4

ADAS

Present

Absent

0,5 g/24 h

0,80 mg/dL

102 ml/min

Mild bilateral hypoacusia

NA in Clinical Folder

n/a

c.686G > A (p.(Arg229Gln)) NPHS2; c.2321C > T (p.(Thr774Ile)) + [=] LAMA5

  1. Mutations were all named in accordance with the standard nomenclature guidelines proposed by the Human Genome Variation Society (http://www.hgvs.org). Nucleotide numbering reflects cDNA numbering with + 1 corresponding to the A of the ATG translation initiation codon in the reference sequence (COL4A5, RefSeq NM_000495.4; COL4A4, RefSeq NM_000092; COL4A3, RefSeq NM_000091; LAMA5 RefSeq NM_005560; NPHS2, NM_014625)