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Table 2 Pathways for the “biosynthesis of cell constituents”

From: Transcriptome analysis of signaling pathways of human peritoneal mesothelial cells in response to different osmotic agents in a peritoneal dialysis solution

Signaling pathways HPG (d3) PYS (d3) PYS (d7)
Diphthamide biosynthesis DPH6   
Dermatan, chondroitin or heparan sulfate biosynthesis CHST1 XYLT2, CSGALNACT2, HS3ST1, DSEL CHST1
S-adenosyl-L-methionine or cysteine biosynthesis III (mammalian) MAT2A MAT2A, EHMT1, NSUN4  
Leukotriene biosynthesis   MGST3 MGST3
Chondroitin or dermatan biosynthesis   CSGALNACT2  
Glycoaminoglycan-protein linkage region biosynthesis   XYLT2  
Inositol pyrophosphate biosynthesis   IPMK, IP6K2  
D-myo-inositol (1,3,4, 5)-trisphosphate or 1D-myo-inositol hexakisphosphate biosynthesis II   IPMK, ITPKB, PLCZ1  
D-myo-inositol (1,3,4, 5, 6)-tetrakisphosphate or 3-phosphoinositide biosynthesis   IPMK, PPP1R16B, DUSP1, PPP1R8, DUSP10, PPTC7, DUSP12, FGFR1, RNGTT, PTPRF  
Citrulline biosynthesis   GLS, ARG2  
Lipoate biosynthesis and incorporation II   LIPT1  
Spermine or spermidine biosynthesis   AMD1  
Uridine-5′-phosphate biosynthesis or pyrimidine ribonucleotides de novo biosynthesis   UMPS, BLM  
Fatty acid biosynthesis initiation II   OXSM  
Serine, glycine or dTMP de novo biosynthesis   SHMT1  
Aspartate biosynthesis   GOT1  
CMP-N-acetylneuraminate biosynthesis I (eukaryotes)   GNE  
Ceramide biosynthesis   KDSR  
CDP-diacylglycerol biosynthesis 1, phosphatidylglycerol biosynthesis II (Non-plastidic) or triacylglycerol biosynthesis   TAMM41, AGPAT5  
Phosphatidylethanolamine biosynthesis II   ETNK1  
Dolichyl-diphosphooligosaccharide biosynthesis   ALG13  
Estrogen biosynthesis   CYP1A1, HSD17B2  
Stearate biosynthesis I (Animals)   ZADH2  
  1. Three separate RNA samples were included in each group (n = 3). The upregulated transcripts were highlighted in bold. Others were downregulated