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Table 2 Top 50 differentially expressed tags between ROP- Os/+ and C57- Os/+ kidneys

From: Identification of nephropathy candidate genes by comparing sclerosis-prone and sclerosis-resistant mouse strain kidney transcriptomes

TAG

ROP-Os

C57-Os

P-Value

Gene Symbol

Gene Name

CTATCCTCTC

873

613

1.47E-10

Gpx3

Glutathione peroxidase 3

ATTAACTTGG

54

14

75E-06

Glud1

Glutamate dehydrogenase 1

TGGTTGCTGG

8

42

2.53E-05

Nrp2b

Neuropilin2b

TCAAAAAAAA

15

0

0.000115878

Pea15

Phosphoprotein enriched in astrocytes 15

ACAAAAAAAA

20

2

0.000138392

Pde6c

Phosphodiesterase 6C, cGMP specific, cone, alpha prime

AACTTGATTA

14

0

0.000237608

Ndufa12

NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12

GTTCACTTTC

27

6

0.000390333

Atp5e

ATP synthase, H+ transporting, mitochondrial F1 complex, epsilon subunit

CTGCTGTAAT

15

2

0.000577048

Aspm

Asp (abnormal spindle)-like, microcephaly associated (Drosophila)

TGTTGTGTTT

0

15

0.000858214

Lman2l

Lectin, mannose-binding 2-like

GTGAGCCCAT

0

14

0.001280824

Hsp90ab1

Heat shock protein 90 kDa alpha (cytosolic), class B member 1

GCCACGCCCC

24

6

0.001296626

Hpd

4-hydroxyphenylpyruvic acid dioxygenase

ATTCTCCAGT

14

39

0.0017137

Rpl23

Ribosomal protein L32

GTCCTGAGAG

9

0

0.002106134

Vamp8

Vesicle-associated membrane protein 8

ATAAAAAAAA

9

0

0.002106134

Bag4

BCL2-associated athanogene 4

ATTCTAACAT

15

2

0.002151531

Acadm

Acyl-Coenzyme A dehydrogenase, medium chain

TGGATGCCTT

1

16

0.002228166

Adh1

Alcohol dehydrogenase

GATTCCGTGA

1

4

0.002494576

Rpl37

Ribosomal protein L37

GCTTTGAATG

19

4

0.002494576

Atpif1

ATPase inhibitory factor 1

TGTCATCTAG

6

30

0.000282

Rpsa

Ribosomal protein SA (laminin receptor like 1)

TGCTGCTCCC

0

12

0.00287027

Gyk

Glycerol kinase

GCTGGCCTCC

1

15

0.003314916

Rhoq

Ras homolog gene family, member Q

GCCAAGTGGA

22

6

0.0041826

Eef2

Eukaryotic translation elongation factor 2

GTTTGTAAAA

22

6

0.0041826

Acsm3

Acyl-CoA synthetase medium-chain family member 3

AGATAACACA

8

0

0.004417209

Rere (atrophin-2)

Arginine glutamic acid dipeptide (RE) repeats

AAGACCTATG

39

17

0.004902036

Dbi

Diazepam binding inhibitor

ATCCGATTCC

11

31

0.005368014

Miox

myo-inositol oxygenase

GTCAATGACG

1

13

0.007371123

Aqp1

Aquaporin1

TCAGGCTGCC

180

130

0.008291421

Fth1

Ferritin heavy chain1

TTGTTAGTGC

36

66

0.008331722

Mdh1

Malate dehydrogenase 1

CTAGTCTTTG

22

7

0.008750438

Rps29

Ribosomal protein S29

CTGCTGTGGA

22

7

0.008750438

Hmgcs2

3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2

AGAGACAAGG

46

23

0.008962126

Ndrg1

N-myc downstream regulated gene 1

GATCAGAAAA

7

0

0.009358827

Prdm16

PR domain containing 16

GTGTGATACA

7

0

0.009358827

Pccb

propionyl Coenzyme A carboxylase, beta polypeptide

CAGTTGGTTC

7

0

0.009358827

Mm.399814

Transcribed locus

CAGTAAAAAA

7

0

0.009358827

Map3k7ip1

Mitogen-activated protein kinase kinasekinase 7interacting protein 1

AACTTTTAAA

7

0

0.009358827

Hp1bp3

Heterochromatin protein 1, binding protein 3

GCTGTATTCA

7

0

0.009358827

Folh1

Folate hydrolase

AATAAAAACT

7

0

0.009358827

FBXL12

F-box and leucine-rich repeat protein 12

TTTGTGACTG

7

0

0.009358827

Ctbp1

C-terminal binding protein 1

AGATCTGCCC

7

0

0.009358827

Atp6v1g1

ATPase, H+ transporting, lysosomal V1 subunit G1

CTGCGGGTCT

7

0

0.009358827

Angptl7

Angiopoietin-like 7

GACCGTCTCA

0

9

0.0098287

Slc4a4

Solute carrier family 4 (anion exchanger), member 4

TTGGACTGAG

0

9

0.0098287

Gabarapl2

Gamma-aminobutyric acid (GABA-A) receptorassociated protein-like 2

TGATTTTGAA

9

1

0.01011074

Por

P450 (cytochrome) oxidoreductase

GAGACTAGCA

3

15

0.010247643

Tspan3

Tetraspanin 3

GTCGTGCCAT

14

33

0.010481768

Nudt19

Nudix (nucleoside diphosphate linked moiety X)-typemotif 19

TGAGGGGAGC

1

12

0.011021395

Flrt2

Fibronectin leucine rich transmembrane

protein 2

TGCCCCCTCC

1

12

0.011021395

Cgnl1

Cingulin-like 1

TAGCTTTAAA

74

45

0.011671747

Igfbp7

Insulin-like growth factor binding protein 7

  1. Mitochondrial, unknown, and ambiguous tags (those that match multiple genes) were excluded from the analysis.