Table 2 Gut microbiomes with differential relative abundance
Level | Change | ESRD vs. PD | PNCI vs. PCI |
|---|---|---|---|
Phylum | Up | Tenericutes | / |
Down | Actinobacteria, Firmicutes | / | |
Class | Up | Mollicutes | / |
Down | Actinobacteria, Clostridia | / | |
Order | Up | Mycoplasmatales | / |
Down | Bifidobacteriales, Clostridiales | Actinomycetales | |
Family | Up | Christensenellaceae, Mycoplasmataceae, Peptoniphilaceae | Prevotellaceae |
Down | Bifidobacteriaceae, Ruminococcaceae | Actinomycetaceae, Lactobacillaceae, Propionibacteriaceae, Streptococcaceae | |
Genus | Up | Christensenella, Dialister, Mycoplasma, Olsenella, Peptoniphilus | / |
Down | Anaerosporobacter, Bifidobacterium, Butyricicoccus, Coprococcus, Dorea, Fusicatenibacter, Gemmiger, Parasutterella, Ruminococcus2, Terrisporobacter | Actinomyces, Atopobium, Lactobacillus, Oribacterium, Streptococcus | |
Species | Up | Anaerostipes_caccae, Christensenella_minuta, Clostridium_aldenense, Clostridium_ramosum, Clostridium_scindens, Eubacterium_eligens, Faecalicoccus_pleomorphus, Mycoplasma_hominis, Prevotella_timonensis | Alistipes_indistinctus, Butyricimonas_virosa |
Down | Anaerosporobacter_mobilis, Anaerostipes_hadrus, Bacteroides_massiliensis, Blautia_luti, Blautia_obeum, Blautia_schinkii, Clostridium_fimetarium, Clostridium_tarantellae, Collinsella_aerofaciens, Coprococcus_catus, Dialister_invisus, Dorea_longicatena, Fusicatenibacter_saccharivorans, Gemmiger_formicilis, Parasutterella_excrementihominis, Roseburia_inulinivorans, Ruminococcus_champanellensis, Ruminococcus_faecis, Ruminococcus_lactaris, Terrisporobacter_glycolicus | Actinomyces_dentalis, Actinomyces_odontolyticus, Atopobium_rimae, Clostridium_butyricum, Clostridium_colinum, Lachnoanaerobaculum_umeaense, Lactobacillus_fermentum, Lactobacillus_iners, Clostridium_colinum, Oribacterium_sinus, Ruminococcus_champanellensis |